Genomic Data Visualization and Interpretation

Tutorial series for visualizing and interpreting omic data

Schedule

Physalia-courses, Freie Universität Berlin, Germany, 11-15 Sept 2017 (course page)

Day Time Duration Module Topic
1 09:30-10:30 1:00 1 Lecture: Introduction to Genomic Data Visualization and Interpretation
  10:30-11:00 0:30   Review of Central Concepts and Resources
  11:00-12:00 1:00   Genome Browsing with IGV, UCSC and Ensembl - part 1
  12:00-13:00 1:00   Lunch
  13:00-15:00 2:00   Genome Browsing with IGV, UCSC and Ensembl - part 2
  15:00-17:30 2:30   Web Resources for Genomic Data Visualization and Interpretation
2 09:30-10:30 1:00 2 Lecture: Using R for Genomic Data Visualization and Interpretation
  10:30-12:00 1:30   Introduction to R
  12:00-13:00 1:00   Lunch
  13:00-15:30 2:30   Introduction to ggplot2 - part 1
3 09:30-11:00 1:30   Introduction to ggplot2 - part 2
  11:00-12:00 1:00 3 Introduction to GenVisR - part 1
  12:00-13:00 1:00   Lunch
  13:00-17:30 4:30   Introduction to GenVisR - part 2
4 09:30-10:30 1:00 4 Lecture: Expression Profiling, Visualization, and Interpretation
  10:30-11:30 1:00   Differential Expression with DEseq2
  11:30-12:30 1:00   Pathway Analysis
  12:30-13:30 1:00   Lunch
  13:30-14:00 0:30   Pathway Visualization
  14:00-14:30 0:30 5 Lecture: Variant Annotation and Interpretation
  14:30-15:30 1:00   Variant Annotation with VEP
  15:30-17:30 2:00   Web resources for Variant Interpretation
5 09:30-11:00 1:30 6 Review
  11:00-12:00 1:00   Open Forum for Questions
  12:00-13:00 1:00   Lunch
  13:00-17:30 4:30   Work on your own data or additional exercises