| 1 |
09:30-10:30 |
1:00 |
1 |
Lecture: Introduction to Genomic Data Visualization and Interpretation |
| |
10:30-11:00 |
0:30 |
|
Review of Central Concepts and Resources |
| |
11:00-12:00 |
1:00 |
|
Genome Browsing with IGV, UCSC and Ensembl - part 1 |
| |
12:00-13:00 |
1:00 |
|
Lunch |
| |
13:00-15:00 |
2:00 |
|
Genome Browsing with IGV, UCSC and Ensembl - part 2 |
| |
15:00-17:30 |
2:30 |
|
Web Resources for Genomic Data Visualization and Interpretation |
| 2 |
09:30-10:30 |
1:00 |
2 |
Lecture: Using R for Genomic Data Visualization and Interpretation |
| |
10:30-12:00 |
1:30 |
|
Introduction to R |
| |
12:00-13:00 |
1:00 |
|
Lunch |
| |
13:00-15:30 |
2:30 |
|
Introduction to ggplot2 - part 1 |
| 3 |
09:30-11:00 |
1:30 |
|
Introduction to ggplot2 - part 2 |
| |
11:00-12:00 |
1:00 |
3 |
Introduction to GenVisR - part 1 |
| |
12:00-13:00 |
1:00 |
|
Lunch |
| |
13:00-17:30 |
4:30 |
|
Introduction to GenVisR - part 2 |
| 4 |
09:30-10:30 |
1:00 |
4 |
Lecture: Expression Profiling, Visualization, and Interpretation |
| |
10:30-11:30 |
1:00 |
|
Differential Expression with DEseq2 |
| |
11:30-12:30 |
1:00 |
|
Pathway Analysis |
| |
12:30-13:30 |
1:00 |
|
Lunch |
| |
13:30-14:00 |
0:30 |
|
Pathway Visualization |
| |
14:00-14:30 |
0:30 |
5 |
Lecture: Variant Annotation and Interpretation |
| |
14:30-15:30 |
1:00 |
|
Variant Annotation with VEP |
| |
15:30-17:30 |
2:00 |
|
Web resources for Variant Interpretation |
| 5 |
09:30-11:00 |
1:30 |
6 |
Review |
| |
11:00-12:00 |
1:00 |
|
Open Forum for Questions |
| |
12:00-13:00 |
1:00 |
|
Lunch |
| |
13:00-17:30 |
4:30 |
|
Work on your own data or additional exercises |
